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Fishlife Context class

FishlifeLHTNameSpace.Rd

Class that allows the transition between user-defined LHT names and those specifically used by Fishlife

Public fields

updated_prefix

string added to each obtained LHT from FishLife

lht_names

User-defined list of LHT names associated with the expected FishLife names

transform_function_list

Forward function conversion required for each user-defined parameter.

backtransform_function_list

Backward function conversion required for each obtained LHT value.

Methods

Public methods

Method new()

Initialise Fishlife Context class

Usage

FishlifeLHTNameSpace$new(
  updated_prefix = "updated",
  lht_names = list(Linf = "log(length_infinity)", Winf = "log(weight_infinity)", K =
    "log(growth_coefficient)", M = "log(natural_mortality)", L50 =
    "log(length_maturity)", Amax = "log(age_max)", Amat = "log(age_maturity)",
    Temperature = "temperature"),
  transform_function_list = list(`log(length_infinity)` = log, `log(weight_infinity)` =
    log, `log(growth_coefficient)` = log, `log(natural_mortality)` = log,
    `log(length_maturity)` = log, `log(age_max)` = log, `log(age_maturity)` = log,
    temperature = base::identity),
  backtransform_function_list = list(`log(length_infinity)` = exp, `log(weight_infinity)`
    = exp, `log(growth_coefficient)` = exp, `log(natural_mortality)` = exp,
    `log(length_maturity)` = exp, `log(age_max)` = exp, `log(age_maturity)` = exp,
    temperature = base::identity)
)

Method clone()

The objects of this class are cloneable with this method.

Usage

FishlifeLHTNameSpace$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.