Single Taxon LHT Predictor class

Class that given some LHTs will fetch their predicted version according to FishLife covariance

Value

matrix-form LHT values to be passed on to FishLife

Super class

LHTpicker::MixinUtilities -> TaxonUpdatedLHTGetter

Public fields

common_columns_ds

common columns across the underlying data structure of FishLife. Taxa's LHT could end up having additional fields that the overall covariance matrix does not support.

Methods

Public methods

• TaxonUpdatedLHTGetter$new()

• TaxonUpdatedLHTGetter$generate_new_lht_matrix()

• TaxonUpdatedLHTGetter$predict()

• TaxonUpdatedLHTGetter$clone()

Inherited methods

• LHTpicker::MixinUtilities$apply_func_to_df()
• LHTpicker::MixinUtilities$create_empty_dataframe()
• LHTpicker::MixinUtilities$list_of_vectors_to_dataframe()

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Method new()

Usage

TaxonUpdatedLHTGetter$new(
  master_db,
  estimated_lhts,
  estimated_lht_cov,
  new_lhts,
  func_domains
)

Arguments

master_db

Fishlife database

estimated_lhts

taxon's LHT numeric vector as fetched from Fishlife.

new_lhts

predicting LHT list which names must conform to FishLife's expectations

func_domains

list of transforming function which names must conform to FishLife's expectations

estimated_lht_conv

taxon's covariance matrix as fetched from Fishlife

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Method generate_new_lht_matrix()

Generate the new LHT matrix in shape and mathematical domain expected by Fishlife

Usage

TaxonUpdatedLHTGetter$generate_new_lht_matrix()

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Method predict()

Generate a matrix with the new predicted LHTs given some initial values, both in log and log-converted space

Usage

TaxonUpdatedLHTGetter$predict()

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Method clone()

The objects of this class are cloneable with this method.

Usage

TaxonUpdatedLHTGetter$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.